PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G238700.1
Common NamePHAVU_008G238700g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 251aa    MW: 27431.5 Da    PI: 6.0261
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G238700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.0003999121123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C++ F ++  L  H++ H
  Phvul.008G238700.1  99 FSCNYCKRKFFSSQALGGHQNAH 121
                         89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.7E-697126No hitNo description
PROSITE profilePS5015711.32399126IPR007087Zinc finger, C2H2
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MKPNFDLEVE AYAEYESEVS SQVASNVSIC SDSLTNISHT TNPIGIHPNL DAISLDLTLN  60
FKNSEPGGRD SIGFSFSSTS ESSNEPASQT TAATIPRVFS CNYCKRKFFS SQALGGHQNA  120
HKRERTLAKR ALRMGFFSER YANLASLPLH GSFRSLGIKT HSSLHHGFSP TMRPPEVKNN  180
ARFDQGYVGI PVFLEDDESD LLWPGSFRQV VEAGDSHQNF ILTGSSDLSF TGVNPPVDIE  240
NSIPDLTLKL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007141937.10.0hypothetical protein PHAVU_008G238700g
RefseqXP_007141938.10.0hypothetical protein PHAVU_008G238700g
SwissprotQ392631e-52ZFP4_ARATH; Zinc finger protein 4
TrEMBLV7BBT20.0V7BBT2_PHAVU; Uncharacterized protein
STRINGGLYMA14G39280.11e-161(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13233192
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.16e-53zinc finger protein 4